BaseSpace Sequence Hub

通过功能强大的商业化计算环境进行数据的管理、分析和共享以简化生物信息学工作。
Which products do I need?

BaseSpace Sequence Hub Professional Annual Subscription


BaseSpace Sequence Hub Enterprise Annual Subscription


Data Analysis & Storage

Illumina Analytics - 1 iCredit


Illumina Analytics  Starter Pack - 1,000 iCredits


Illumina Analytics  - 5,000 iCredits


Illumina Analytics  - 50,000 iCredits


Illumina Analytics - 100,000 iCredits


Illumina Analytics Consumption Billing


*The 30-day free trial begins automatically when a user first creates an account and logs in. The trial grants users with 250 iCredits (which expire after 30 days) that can be applied to compute fees for any BaseSpace app and data storage above 1 TB. After the trial expires, the user can no longer run apps, but can continue to monitor sequencing runs, automatically demultiplex uploaded runs, store a limited amount of data, share & transfer with collaborators, and download data.

Product Highlights

As a key component of the BaseSpace Suite, BaseSpace Sequence Hub is a direct extension of your Illumina instruments. Encrypted data flow from the instrument into BaseSpace Sequence Hub, enabling you to manage and analyze your data easily with a curated set of analysis apps. BaseSpace Sequence Hub, powered by Amazon Web Services (AWS):

  • Offers a security-first environment
  • Enables you to set up runs and monitor instrument run quality
  • Promotes efficiency by converting sequencing data to a standard format and streaming directly to the cloud
  • Provides access to computing resources without the capital expenditure of in-house infrastructure
  • Increases organizational productivity with easy access to a multitude of genomic analysis apps (provided by you, Illumina, or third parties)

See All BaseSpace Data Analysis Apps

Frequently Purchased Together

ISO 27001 CERTIFIED by schellman
GDPR Ready
SARS-CoV-2 NGS数据工具包


SARS-CoV-2 NGS Data Toolkit
Integrated Run Setup and Monitoring

Integration with all Illumina instruments means that users can set up runs and monitor them from anywhere.

Streamlined Data Management and Storage

Scale up or down depending upon your storage needs—all without burdening your IT department with hardware maintenance.

Simplified Data Analysis

Easily perform routine data analysis with a comprehensive library of apps available, including a robust suite of accurate, ultra-rapid DRAGEN secondary analysis pipelines.





Included Storage 1 TB 1 TB 1 TB
Complimentary iCredits 250* iCredits 500 iCredits 500 iCredits
Payment Plans n/a Monthly Billing or Pre-paid iCredits Monthly Billing or Pre-paid iCredits
Run Setup and Monitoring
FASTQ Generation Free Free Free
Data Egress Free Free Free
Data Sharing
Advanced Security & Compliance (Encryption, ISO 27001, ISO 13485)
API and Command-line Access
Number of Users One Unlimited Unlimited
Workgroups   One Unlimited
Premier Security (Private Domain, Single Sign-on**, Audit Trail, Access Control)    
HIPAA BAA (US-only)    
Service Level Agreement    

* 250 iCredits expire after 30-day introductory trial.

** Available for systems with control software that support Universal Copy Service. Not available for all legacy systems.

Application Cost Details
Human Whole-Genome Sequencing 7 iCredits
  • Sample: 30X hWGS
  • Size: 120Gb
  • App: DRAGEN Germline
  • Input: FASTQ
  • Output: VCF, BAM/CRAM
Exome Sequencing 2 iCredits
  • Sample: Exome
  • Size: 10Gb
  • App: DRAGEN Enrichment
  • Input: FASTQ
  • Output: VCF, BAM/CRAM
Cancer Panel 2 iCredits
  • Sample: Myeloid Panel
  • Size: 50Mb
  • App: DNA Amplicon
  • Input: FASTQ
  • Output: Somatic variants
Transcriptome 2 iCredits
  • Sample: RNA-Seq
  • Size: 50M Reads
  • Input: FASTQ
  • Output: Fusions, Transcripts
Differential Expression 1 iCredit
  • Sample: Tumor Exome
  • Size: 10Gb
  • App: RNA-Seq Differential Expression
  • Input: FASTQ
  • Output: Somatic variants
RNA Panel 2 iCredits
  • Sample: RNA Panel
  • Size: 3 million reads
  • App: RNA Amplicon
  • Input: FASTQ
  • Output: Somatic variants
16S rRNA 1-2 iCredits
  • Sample: 16S Metagenomics
  • App: 16S Metagenomics
  • Input: FASTQ
  • Output: Taxonomic classifications
BaseSpace Sequence Hub Apps Quick Guide

Review the suite of low-cost data analysis app available within BaseSpace Sequence Hub.

Read Quick Guide
BaseSpace Sequence Hub Informational Resources

Get access to a compilation of resources for new BaseSpace Sequencing Hub users.

Read More
Illumina Informatics Blog

Read about recent updates in our Informatics Blog.

Read More


Making Informatics Easy for Helix

How Helix scaled rapidly into one of the largest human exome sequencing operations in the world using BaseSpace Sequence Hub.

Watch Video

通过BaseSpace Sequence Hub SRA Submission App,可在从文库制备到数据分析的整个过程跟踪样本,帮助BRC-Seq为其客户提供高质量测序数据和其他价值。


Supporting Data and Figures


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