MiniSeq products and software solutions

Library prep and sequencing reagent kits for low-throughput DNA and RNA sequencing with the MiniSeq benchtop sequencer

MiniSeq Products and Services

MiniSeq Reagent Kit
MiniSeq Reagent Kit

Access cost-efficient sequencing with high data quality, even for low numbers of samples. MiniSeq Rapid reagents are now available and reduce sequencing run times to < 5 hours, enabling faster detection of respiratory viruses and pathogens, including SARS-CoV-2.

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AmpliSeq for Illumina BRCA Panel
AmpliSeq for Illumina BRCA Panel

Targeted research panel investigating somatic and germline variants in <em>BRCA1</em> and <em>BRCA2</em>.

TruSight RNA Pan-Cancer
TruSight RNA Pan-Cancer

Targeting 1385 cancer genes for gene expression, variant, and fusion detection studies in many RNA sample types including blood, bone marrow, and formalin-fixed, paraffin-embedded (FFPE) tissue.

TruSight Cancer
TruSight Cancer

These expert-defined sequencing research panels target 94 genes and 284 SNPs associated with a predisposition towards various cancers.

TruSeq Small RNA Library Preparation Kits
TruSeq Small RNA Library Preparation Kits

These kits provide a simple, cost-effective solution for generating miRNA and small RNA sequencing libraries directly from total RNA, for any species.

HiSeq 3000/4000 SBS Kit
HiSeq 3000/4000 SBS Kit

Includes sequencing reagents specifically designed for the HiSeq 3000/HiSeq 4000 Systems. Enables production-scale sequencing for diverse applications.


Local Run Manager
Local Run Manager

Local Run Manager is an integrated on-instrument solution for creating a run, monitoring status, analyzing sequencing data, and viewing results. Designed to minimize setup and the risk of user error, the system enables onboard review of real-time data and performance metrics. Researchers can interface with the MiniSeq System from any web browser.

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BaseSpace Sequence Hub

Data management and simplified bioinformatics for labs getting started and for rapidly scaling next-generation sequencing (NGS) operations.

Correlation Engine

Correlation Engine is an interactive omics knowledgebase that puts private omics data in biological context with highly curated public data.

BaseSpace Variant Interpreter

BaseSpace Variant Interpreter allows scientists to rapidly identify biologically significant variants from human genomic data.


MiniSeq Control Software

MiniSeq Control Software is pre-installed on the MiniSeq sequencing system. This system control software guides you through the steps to load the flow cell and reagents, and provides an overview of quality statistics that you can monitor as the run progresses.

This software includes multiple standardized data formats to ensure compatibility with downstream analysis and visualization tools.

During the run, MiniSeq Control Software performs the following tasks:

  • Operates the flow cell stage and fluidics system
  • Controls flow cell temperatures
  • Captures images of clusters on the flow cell

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miniseq system
Bring Bioinformatics In-House to Cut Costs and Time

See how Phosphorus uses the DRAGEN Bio-IT Platform to perform genomics data analysis.

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Bring Bioinformatics In-House to Cut Costs and Time
Comprehensive Scientific Support

Illumina services and support begins when the MiniSeq System is delivered. Illumina scientists and engineers assist with NGS system installation and setup and train laboratory personnel. In addition to onsite support, training courses are available to bring laboratory personnel quickly up to speed.

Illumina scientists are available 24/7 globally to answer questions every step of the way, enabling researchers to focus on making the next breakthrough discovery.


Illumina Product Support Services

In addition to the 1-year basic service warranty included with system purchase, Illumina offers maintenance, repair, and qualification solutions.

Illumina Training

Get high-quality results on Illumina technology even faster with instructor-led or hands-on courses and web-based training options.

Instrument Qualification Services

Verify instrument installation, operation, or performance and obtain an audit-ready report to help meet regulatory requirements.

Proactive Instrument Monitoring

Connect to Illumina Proactive to access this complimentary instrument performance monitoring and proactive support service.